Systematics Collections Data

ICMP 7049 – Xenopyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano 2018

Data provider:
International Collection Of Microorganisms
Barcode:
ICMP 7049
Type status:
ex Type
Culture type:
Fungal Culture
Database record added:
25 January 2002
Database record updated:
27 November 2018
Components
Primary component
Active identification
Determined name:
Pyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Gruyter, Aveskamp & Verkley
Determiner:
Aveskamp et al.
Identification date:
2010 (Verbatim: 2010)
Preferred name:
Xenopyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano 2018
Division:
Ascomycota
Class:
Dothideomycetes
Order:
Pleosporales
Family:
Pyrenochaetopsidaceae
Identification type:
Determination
Type status:
ex Type
Associations:
isolated from Lolium perenne L.
Other identifications
Identification
Determined name:
Phoma pratorum P.R. Johnst. & Boerema
Determiner:
Identification date:
Preferred name:
Xenopyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano 2018
Active:
no
Identification type:
Determination
Note:
identification confirmed using DNA sequences [PRJ, Jan 2016]
Identification
Determined name:
Phoma pratorum
Determiner:
Identification date:
Preferred name:
Xenopyrenochaetopsis pratorum (P.R. Johnst. & Boerema) Valenzuela-Lopez, Crous, Stchigel, Guarro & Cano 2018
Active:
no
Identification type:
Received as
Other components
Active identification
Determined name:
Lolium perenne L.
Determiner:
Identification date:
Preferred name:
Lolium perenne L.
Division:
Tracheophyta
Class:
Liliopsida
Order:
Poales
Family:
Gramineae
Vernacular name:
perennial ryegrass
Identification type:
Determination
Part affected:
leaf
Present:
no
Collection events
Primary collection event
Collection event type:
Field
Standard locality
Location:
Ruakura
Georeferences:
Latitude and Longitude (WGS84):  -37.77465  175.310297 
Verbatim locality:
Ruakura
Verbatim collector:
Verbatim date:
Country:
New Zealand
New Zealand Area Codes:
Waikato
Culture flags
Price Category:
Category 1
External links
CIS - PDD:

PDD 41671

GenBank:

KT309608 - tub2

GU238136 - 28S ribosomal RNA

KT310032 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

GU238228 - 18S ribosomal RNA

KT309366 - act

NR_111623 - 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

KT389671 - RPB2

KT389846 - tub2

JF740263 - 18S ribosomal RNA, 28S ribosomal RNA, 5.8S ribosomal RNA, internal transcribed spacer 1, internal transcribed spacer 2

MH861363 - genomic DNA

MH873116 - large subunit ribosomal RNA

Literature:

Chen, Q.; Jiang, J.R.; Zhang, G.Z.; Cai, L.; Crous, P.W. (2015)Resolving the Phoma enigma.Studies in Mycology82(1)137-217. DOI: 10.1016/j.simyco.2015.10.003

Johnston, P. R.; Park, D.; Ho, W. W. H.; Alexander, B. J. R. (2017)Genetic validation of historical plant pathology records - a case study based on the fungal genus Phoma from the ICMP culture collection.Plant Pathology66(9)1424-1431. DOI: 10.1111/ppa.12728

Culture events
Isolated:
Date:
01 January 1980 (Verbatim: 01 Jan 1980)
Deposited:
Note:
Derived from earliest batch date
Actioned by:
Peter R. Johnston (Reference number A)
Date:
01 April 1981 (Verbatim: 01 Apr 1981)
Transferred via:
Actioned by:
Eric H. C. McKenzie
Duplicates
American Type Culture Collection: ATCC 60466
Direction:
Duplicate
Westerdijk Fungal Biodiversity Institute: CBS 445.81
Direction:
Sent
Assigned reference numbers
PDDCC:
PDDCC 7049
Permissions
Project permits
Project title:
Local Contexts - ICMP Culture Collection
Reference:
ICMP Collection - Local Contexts
Biocultural (BC) Notice